Publications by members of the Bioprocessing Group are listed in chronological order by article
title under the headings listed below. Use the "find" feature of your browser to search for
specific terms or authors.
Note that some articles may fit in several categories, but were listed
under the most relevent heading. Publications by former Group members
or by members of other groups at Battelle that tie in to work done in the Bioprocessing Group are listed
under the "Articles Related to Bioprocessing Group Research" heading.
Initial Screening Assessment of Natural Attenuation Potential at the Brooklawn Site Truex, M.J., T.P. Clement, and R.S. Skeen. 1999. Battelle Pacific Northwest Division, Richland, WA. PNWD-3016.
"Modeling Multispecies Reactive Transport in Ground Water." Clement, T.P., Y.Sun, B.S. Hooker, and J.N. Petersen. 1998. Ground Water Monitoring & Remediation, 18(2): 79-92. [Abstract]
"Optimization of Pump-Treat-Inject (PTI) Design for the Remediation of a Contaminated Aquifer: Multi-Stage Design with Chance-Constraints." Bear, J. and Y.Sun. 1998. J. of Contaminant Hydrology, 29(3): 223-242.
"Modeling Natural Attenuation of Contaminants in Saturated Groundwater." Clement, T.P., Y.Sun, B.S. Hooker, and J.N. Petersen. 1997. In: Proceedings of the Fourth International Symposium on In situ and On-site Bioremediation. pp. 37-42. [Abstract]
"Pulsing of Multiple Nutrients as a Strategy to Achieve Large Biologically Active Zones During In Situ Carbon Tetrachloride Remediation." Franzen, M.E.L., J.N. Petersen, T.P. Clement, B.S. Hooker, and R.S. Skeen. 1997. Computational Geosciences, 1(3/4): 271-288. [Abstract]
"Improved Biomass Distributon Using Pulsed Injections of Electron Donor and Acceptor." Peyton, B.M. 1996. Water Research, 30: 756-758.
"Modeling Microbial Transport and Accumulation Processes in Saturated Porous Media: A Review." Clement, T.P., B.M. Peyton, R.R. Ginn, and R.S. Skeen. 1996. Water Research, submitted, : .
"Numerical Modeling of Biologically Reactive Transport Near a Nutrient Injection Well." Clement, T.P., B.S. Hooker, and R.S. Skeen. 1996. ASCE J. of Environmental Engineering, 122(9): 833-839.
"The Role of Oxygen Diffusion in Passive Bioremediation of Petroleum Contaminated Soils." Huesemann, M.H. and M.J. Truex. 1996. J.of Hazardous Materials, 51: 93-113. [Abstract]
"Enhancing In Situ Bioremediation with Pneumatic Fracturing." Anderson, D.B., B.M. Peyton, J.J. Liskowitz, C.Fitzgerald, and J.R. Schering. 1995. In: Applied Bioremediation of Petroleum Hydrocarbons, R.E. Hinchee, J.A. Kittel, and H.J. Reisinger, eds. Battelle Press: Columbus, OH. pp. 467-473.
"Field Desorption Mass Spectroscopy Monitoring of Changes in Hydrocarbon Type Composition During Petroleum Biodegradation." Huesemann, M.H. 1995. In: Monitoring and Verification of Bioremediation, R.E. Hinchee, G.S. Douglas, and S.K. Ong, eds. Battelle Press: Columbus, OH. pp. 11-18. [Abstract]
"Modeling Biologically Reactive Transport in Porous Media." Clement, T.P., B.S. Hooker, and R.S. Skeen. 1995. In: Proceedings of the International Conference on Mathematics and Computations, Reactor Physics, and Environmental Analyses, Volume 1. pp. 192-201.
"Modeling of In-Situ Biological Processes in Contaminated Aquifers." Clement, T.P., B.S. Hooker, and R.S. Skeen. 1995. In: Proceedings of the Annual meeting of Air & Waste Management Association.
"Predictive Model for Estimating the Extent of Petroleum Hydrocarbon Biodegradation in Contaminated Soils." Huesemann, M.H. 1995. Environmental Science and Technology, 29: 7-18.
"The Use of Bench and Field-scale Data for the Design of an In Situ Carbon Tetrachloride Bioremediation System." Peyton, B.M., M.J. Truex, R.S. Skeen, and B.S. Hooker. 1995. In: Bioremediation of Chlorinated Solvents, Proceedings of the Third International Symposium on In Situ and On-Site Bioreclamation, San Diego, CA, April 24-27, R.E. Hinchee, A. Leeson, L. Semprini, eds. Battelle Press: Columbus, OH. pp. 111-116.
"A Demonstration of In Situ Bioremediation of CCl4 at the Hanford Site." Hooker, B.S., R.S. Skeen, M.J. Truex, and B.M. Peyton. 1994. In: In Situ Remediation: Scientific Basis for Current and Future Technologies, Part 1, G.W. Gee and N.R. Wing, eds. Battelle Press: Columbus, OH. pp. 281-292. [Abstract]
"A Method for Predicting the Extent of Petroleum Hydrocarbon Biodegradation in Contaminated Soils." Huesemann, M.H. 1994. In: Proceedings of the 33rd Hanford Symposium on Health and the Environment - In Situ Remediation: Scientific Basis for Current and Future Technologies, Part 1, G.W. Gee and N.W. Wing, eds. Battelle Press: Columbus, OH. pp. 195-207.
"Alternating Extraction/Injection Well Interactions for In Situ Bioremediation." Shouche, M.J., J.N. Petersen, R.S. Skeen, and B.S. Hooker. 1994. Appl. Biochem. Biotechnol, 45: 775-785. [Abstract]
"Comparison Between Solid-Phase and Slurry-Phase Bioremediation of Diesel and Motor Oil Contaminated Soils." Huesemann, M.H. 1994. In: Proceedings of IGT\'s Seventh International Symposium on Gas, Oil, and Environmental Biotechnology.
"Deploying In Situ Bioremediation at the Hanford Site." Truex, M.J., C.D. Johnson, D.R. Newcomer, L.A. Doremus, B.S. Hooker, B.M. Peyton, R.S. Skeen, and A.Chilikapati. 1994. In: In Situ Remediation: Scientific Basis for Current and Future Technologies, Part 1, G. W. Gee and N. R. Wing, eds. Battelle Press: Columbus, OH. pp. 209-231.
"Guidelines for Land-Treating Petroleum Hydrocarbon Contaminated Soils Under Field Conditions." Huesemann, M.H. 1994. J. of Soil Contamination, 3(3): 299-318.
"The Effects of Soil Type, Crude Oil Loading, Oxygen, Crude Oil Type, and Commercial Bacteria on Crude Oil Bioremediation Kinetics as Measured by Soil Respirometry." Huesemann, M.H. and K.O. Moore. 1994. In: Hydrocarbon Bioremediation, R.E. Hinchee, B.C. Alleman, R.E. Hoeppel, and R.N. Miller, eds. Lewis Publishers: Boca Raton, FL. pp. 58-71.
"Changes in Hydrocarbon Composition During Slurry Bioremediation of Diesel-Based Drill Cuttings." Huesemann, M.H., I.A. Rhodes, L.M. Rice-Jackson, L.L. Sterna, and K.O. Moore. 1993. In: Proceedings of IGT\'s Sixth International Symposium on Gas, Oil, and Environmental Biotechnology.
"Compositional Changes During Landfarming Of Weathered Michigan Crude Oil Contaminated Soil." Huesemann, M.H. and K.O. Moore. 1993. J. of Soil Contamination, 2(3): 245-264.
Cost/Benefit Analysis Comparing Ex Situ Treatment Technologies for Removing Carbon Tetrachloride from Hanford Ground Water. Truex, M.J., D.R. Brown, and D.C. Elliott. 1993. Pacific Northwest National Laboratory: Richland, WA. PNL-8334.
"In Situ Bioremediation of Hanford Groundwater." Skeen, R.S., S.P. Luttrell, T.M. Brouns, B.S. Hooker, M.J. Shouche, and J.N. Petersen. 1993. Remediation, 3: 353-367. [Abstract]
"The Fate Of BDAT Polynuclear Aromatic Compounds During Biotreatment Of Refinery API Oil Separator Sludge." Huesemann, M.H., K.O. Moore, and R.N. Johnson. 1993. Environmental Progress, 12(1): 30-38.
"Use of a Mathematical Model for Prediction of Optimum Feeding Strategies for In situ Bioremediation." Shouche, M.J., J.N. Petersen, and R.S. Skeen. 1993. Appl. Biochem. Biotechnol, 39/40: 763-779. [Abstract]
"In Situ Bioremediation of Hanford Ground water." Skeen, R.S., K.R. Roberson, D.J. Workman, J.N. Petersen, and M.J. Souche. 1992. In: Proceedings of the Federal Environmental Restoration \'92 Conference, April 15-17, Vienna, Virginia. pp. 113-117. [Abstract]
"Bioremediation of Hanford Groundwater." Brouns, T.M., D.B. Anderson, J.K. Fredrickson, S.P. Luttrell, R.S. Skeen, and D.J. Workman. 1991. In: Proceedings of Environmental Remediation \'91, Brouns, T.M., D.B. Anderson, J.K. Fredrickson, S.P. Luttrell, R.S. Skeen, and D.J. Workman, eds. pp. 101-106.
"Effects of Reaction Kinetics on Predicted Concentration Profiles During Subsurface Bioremediation." Sun, Y., J.N. Petersen, T.P. Clement, and B.S. Hooker. 1998. J. of Contaminant Hydrology, 31(3): 147-162.
"Microbial Reduction of Vitamin B12 by Shewanella alga Strain BrY with Subsequent Transformation of Carbon Tetrachloride." Workman, D.J., S.L. Woods, Y.A. Gorby, J.K. Fredrickson, and M.J. Truex. 1997. Environ. Sci. Technol., 31: 2292-2297.
"Kinetics of U(VI) Reduction by a Dissimilatory Fe(III)-Reducing Bacterium Under Non-Growth Conditions." Truex, M.J., B.M. Peyton, N.B. Valentine, and Y.A. Gorby. 1997. Biotechnol. and Bioeng., 55: 490-496.
"Effects of Several Substrates on Tetrachloroethylene Dechlorination in Anaerobic Soil Microcosms." Gao, J., R.S. Skeen, B.S. Hooker, and R.D. Quesenberry. 1997. Water Research, 31(10): 2479-2486. [Abstract]
"Microbial Growth and Transport in Porous Media Under Denitrifying Conditions: Experiment and Simulations." Clement, T.P., B.M. Peyton, R.S. Skeen, D.A. Jennings, and J.N. Petersen. 1997. J. of Contam. Hydrol, 24: 269-286.
Characterization of Anaerobic Chloroethene-Dehalogenating Activity in Several Subsurface Sediments. Skeen, R.S., J.Gao, B.S. Hooker, and R.D. Quesenberry. 1996. Pacific Northwest National Laboratory: Richland, WA. PNNL-11417, UC-902. [PDF File (3.6 MB) ]
"Effect of Tetrachloroethylene (PCE) on Methane and Acetate Production by a Methanogenic Consortium." Bareded-Samuel, Y., J.N. Petersen, and R.S. Skeen. 1996. Applied Biochem. Biotechnol, 57/58: 915-922. [Abstract]
"Effects of Nitrate and Acetate Availability on Chloroform Production During Carbon Tetarachloride Destruction." Sherwood, J.L., J.N. Petersen, R.S. Skeen, and N.B. Valentine. 1996. Biotechnol. Bioeng, 51: 551-557. [Abstract]
"Effects of Temperature on Perchloroethylene Dechlorination by a Methanogenic Consortium." Gao, J., R.S. Skeen, and B.S. Hooker. 1995. In: Bioremediation of Chlorinated Solvents, R.E. Hinchee. A. Leeson, and L. Semprini, eds. Battelle Press: Columbus, OH. pp. 53-59. [Abstract]
"Kinetics of Chlorinated Ethylene Dehalogenation under Methanogenic Conditions." Skeen, R.S., J.Gao, and B.S. Hooker. 1995. Biotech. and Bioeng, 48: 659-666. [Abstract]
"Kinetics of Nitrate Inhibition of Carbon Tetrachloride Transformation by a Denitrifying Consortia." Skeen, R.S., N.B. Valentine, B.S. Hooker, and J.N. Petersen. 1995. Biotechnol. Bioeng, 45: 279-284. [Abstract]
"A Batch Reactor for Monitoring Process Dynamics During Biodegradation of Volatile Organics." Skeen, R.S., M.J. Truex, J.N. Petersen, and J.S. Hill. 1994. Environmental Progress, 13: 174-177. [Abstract]
"Application of a Structured Kinetic Model to the Bioremediation of Hanford Groundwater." Hooker, B.S., R.S. Skeen, and J.N. Petersen. 1994. Bioremediation of Chlorinated and Polycyclic Aromatic Hydrocarbon Compounds, : 387-392.
"Biological Destruction of CCl4 Part I: Experimental Design and Data." Petersen, J.N., R.S. Skeen, K.M. Amos, and B.S. Hooker. 1994. Biotechnol. Bioeng, 43: 521-528. [Abstract]
"Transport and Biodegradation of Quinoline in Horizontally Stratified Porous Media." Szecsody, J. E., F. J. Brockman, B. D. Wood, G. P. Streile, and M. J. Truex. 1994. J. Contam. Hydrol., 15: 277-304.
"Biological Destruction of CCl4 Part II: Kinetic Modeling." Hooker, B.S., R.S. Skeen, and J.N. Petersen. 1994. Biotechnol. Bioeng, 44: 211-218. [Abstract]
"Comparative Efficiency of Microbial Systems for Destroying Carbon Tetrachloride Contamination in Hanford Ground Water." Truex, M.J., R.S. Skeen, S.M. Caley, and D.J. Workman. 1994. In: Bioremediation of Chlorinated and Polycyclic Aromatic Hydrocarbon Compounds, R.E. Hinchee, L. Semprini, and S.K. Ong, eds. Lewis Publishers: Ann Arbor, MI. pp. 80-85.
"Influence of Nitrate Concentration on Carbon Tetrachloride Transformation by a Denitrifying Microbial Consortium." Skeen, R.S., K.M. Amos, and J.N. Petersen. 1994. Water Research, 28: 2433-2438. [Abstract]
"Effect of Starvation on the Induction of Quinoline Degradation for a Subsurface Bacterium in a Continuous-Flow Column." Truex, M.J., F.J. Brockman, D.L. Johnstone, and J.K. Fredrickson. 1992. Applied and Environmental Microbiology, 58: 2386-2392.
"Kinetics of In Situ Bioremediation of Hanford Groundwater." Skeen, R.S., S.M. Cote, M.J. Truex, and J.N. Petersen. 1992. In: Proceedings of the Spectrum '92 Conference. pp. 1209-1213.
"The effects of acetate and propionate on solventogenesis in uncontrolled pH batch cultures of Clostridium acetobutylicum." Huesemann, M.H. and E.T. Papoutsakis. 1990. Applied and Environmental Microbiology, 56: 1497-1500.
"Comparison between in vivo and in vitro enzyme activities in continuous and batch fermentations of Clostridium acetobutylicum." Huesemann, M.H. and E.T. Papoutsakis. 1989. Applied Microbiology Biotechnology, 30: 585-595.
"Enzymes limiting butanol and acetone formation in continuous and batch cultures of Clostridium acetobutylicum." Huesemann, M.H. and E.T. Papoutsakis. 1989. Applied Microbiology Biotechnology, 31: 435-444.
"Solventogenesis in Clostridium acetobutylicum fermentations related to carboxylic acid and proton concentrations." Huesemann, M.H. and E.T. Papoutsakis. 1988. Biotechnology Bioengineering, 32: 843-852.
"Macroscopic models for predicting changes in saturated porous media properties cause by microbial growth." Clement, T.P., B.S. Hooker, and R.S. Skeen. 1996. Ground Water, 34: 934-942.
"An Experimental Study of Microbial Transport in Porous Media." Jennings, D.A., J.N. Petersen, R.S. Skeen, B.M. Peyton, B.S. Hooker, T.P. Clement, D.L. Johnstone, and D.R. Yonge. 1995. In: Bioaugmentation for Site Remediation, R.E. Hinchee, J. Fredrickson, B.C. Alleman, eds. Battelle Press: Columbus, OH. pp. 97-103.
"Control of Bacterial Exopolysaccharide Production and Plugging in the Subsurface." Hanneman, T.F., D.L. Johnstone, D.R. Yonge, J.N. Petersen, B.M. Peyton, and R.S. Skeen. 1995. In: Microbial Processes for Bioremediation, R.E. Hinchee, C.M. Vogel, and F.J. Brockman, eds. Battelle Press: Columbus, OH. pp. 323-328. [Abstract]
"Effects of Slight Variations in Nutrient Loadings on Pore Plugging in Soil Columns." Jennings, D.J., J.N. Petersen, R.S. Skeen, B.S. Hooker, B.M. Peyton, D.J. Johnstone, and D.R. Yonge. 1995. Applied Biochem. Biotechnol, 51/52: 727-734. [Abstract]
"Evaluation of Bacterial Detachment Rates in Porous Media." Peyton, B.M., R.S. Skeen, B.S. Hooker, R.W. Lundman, and A.B. Cunningham. 1995. Applied Biochem. Biotechnol, 51/52: 785-797. [Abstract]
"Two-Well Test for Determining Hydraulic Properties of Aquifers." Clement, T.P., M.J. Truex, and B.S. Hooker. 1997. Ground Water, 35(4): 698-703. [Abstract]
Geology, Hydrology, Chemistry, and Microbiology of the In Situ Bioremediation Demonstration Site. Newcomer, D.R., L.A. Doremus, S.H. Hall, M.J. Truex, V.R. Vermeul, and R.E. Engelman. 1995. Pacific Northwest National Laboratory: Richland, WA. PNL-10422. [PDF File ( MB) ]
"Guidelines for the Development of Effective Statistical Soil Sampling Strategies for Environmental Applications." Huesemann, M.H. 1994. In: Hydrocarbon Contaminated Soils and Groundwater - Volume 4, E.J. Calabrese and P.T. Kostecki, eds. Lewis Publishers: Boca Raton, FL. pp. 47-96.
"Biosorption of Cadmium, Cobalt, Nickel, and Strontium by a Bacillus Simplex Strain Isolated from the Vadose Zone." Valentine, N.B., H.Bolton Jr, M.T. Kingsley, G.R. Drake, D.L. Balkwill, and A.E. Plymale. 1996. J. Industrial Microbiology, 16: 189-196. [Abstract]
Biogenic Sulfide Precipitation of Heavy Metals to Recycle Electroplating and Electronics Manufacturing Process Streams. Peyton, B.M., M.J. Truex, and J.J. Toth. 1995. Battelle, Pacific Northwest Division: Richland, WA. PNWD-2315.
"Initial Process Development for Uranium Bioprecipitation." Truex, M.J., B.M. Peyton, Y.A. Gorby, and N.B. Valentine. 1994. In: Proceedings of the 9th Annual Conference on Hazardous Waste Remediation, Great Plains-Rocky Mountain Hazard Substance Research Center. Kansas State University: Manhattan, KS.
"Application of Pulse Spilling Self-Aerator in Textile Waste Water Treatment." Shen, L., J.Liu, K.Kao, R.Zhao, and J.Gao. 1994. Guangzhou Environmental Sciences, 9(2): 17-19.
"Single Cell Protein Production with Pulse Spilling Self-Aerating Bioreactor." Kao, K., R.Zhao, and J.Gao. 1994. Food and Fermentation Industries, 1: 54-55.
"The Application of 200 M3 Spilling Self-Aspirating Reactor for Waste Water Treatment in Glutamate Production." Gao, J., R.Zhao, D.Chen, and K.Kao. 1991. Fermentation Technology Communication, 20(3): .
"The Research on Glutamic Acid Fermentation by 10-Liter 3-Curved-Blade-Rotator Self-Aspiration Bioreactor with Stator." Gao, J. and K.Kao. 1984. Fermentation Technology Communication, 13(1): .
"Enhanced Recovery of A Secreted Mammalian Protein from Suspension Culture of Genetically Modified Tobacco Cells." Magnuson, N.S., P.M. Linzmaier, J.Gao, R.Reeves, G.An, and J.M. Lee. 1996. Protein Expression and Purification, 7: 220-228.
"Regulatory Elements Controlling Developmental and Environmental Regulation of A Ribosomal Protein Gene L34 in Tobacco." Dai, Z., J.Gao, J.Lee, and G.An. 1996. Plant Molecular Biology, 32: 1055-1065.
"Developmental and Environmental Regulation of Ribosomal Protein Genes in Tobacco." Gao, J., S.Kim, Y.Chung, J.M. Lee, and G.An. 1994. Plant Molecular Biology, 25: 761-770.
"Nucleotide and Protein Sequences of Tobacco Ribosomal Protein L17." Gao, J., S.-. Kim, J.M. Lee, and G.An. 1993. Plant Physiology, 103: 1027-1028.
"Application of a New Structured Model to Tobacco Cell Cultures." Hooker, B.S. and J.M. Lee. 1992. Biotechnol. Bioeng, 39: 765-774.
"Effect of Oxygen Supply on the Suspension Culture of Genetically Modified Tobacco Cells." Gao, J. and J.M. Lee. 1992. Biotechnology Progress, 8: 285 - 290.
"The Stability of Foreign Protein Production in Genetically Modified Plant Cells." Gao, J., J.M. Lee, and G.An. 1991. Plant Cell Reports, 10: 533-536.
"Cultivation of Plant Cells in a Stirred Vessel: Effect of Impeller Design." Hooker, B.S., J.M. Lee, and G.An. 1990. Biotechnol. Bioeng, 35: 296-304.
"Cultivation of Plant Cells in Aqueous Two-Phase Polymer Systems." Hooker, B.S. and J.M. Lee. 1990. Plant Cell Reports, 8: 546-549.
"The Response of Plant Tissue Culture to a High Shear Environment." Hooker, B.S., J.M. Lee, and G.An. 1989. Enzy. Microb. Technol, 11: 484-490.
"Biochemical and hormonal evaluation of chicken pineal gland in vitro." Quesenberry, R.D. and F.C. Leung. 1993. In: Proceedings of Western and Southwestern Regional Conference on Comparative Endocrinology. pp. 36.
"Intrinsic Remediation: An Environmental Restoration Technology." Hooker, B.S. and R.S. Skeen. 1996. Curr. Opin. Biotech, 7: 317-320. [Abstract]
Contaminants at DOE Sites and Their Susceptibility to Bioremediation. Lenhard, R.J., R.S. Skeen, and T.M. Brouns. 1995. Soil Science Society of America: , . pp. 157-172. Chapter 10. [Abstract]
"In Situ Bioremediation Destroys Carbon Tetrachloride in a Contaminated Aquifer." Truex, M.J. 1995. Environmental Solutions, 8(11): 30-33.
"Understanding Ethical Dilemmas Using the Professional Moral Development Theory." Huesemann, M.H. 1995. In: Proceedings of 88th Annual Meeting of the Air and Waste Management Association.
"A Project Oriented Approach to an Undergraduate Biochemical Engineering Laboratory." Hooker, B.S. 1994. Chem. Eng. Educ, 28: 98-102.
"Overview of Technology Modeling in the Remedial Action Assessment System (RAAS)." Johnson, C.D., L.M. Bagaasen, T.C. Chan, D.A. Lamar, J.L. Buelt, C.J. Freeman, and R.S. Skeen. 1994. In: Proceedings Spectrum '94: Nuclear and Hazardous Waste Management International Topical Meeting, Volume 2. American Nuclear Society: La Grange Park, IL. pp. 1078-1085. [Abstract]
"Bench-Scale/Field-Scale Interpretation of In Situ Bioremediation." Cunningham, A.B. and B.M. Peyton. 1995. In: Proceedings of the Third International Symposium on In Situ and On-Site Bioreclamation, San Diego, CA, April 24-27, R.E. Hinchee, J.A. Kittel, H.J. Reisinger, eds. Battelle Press: Columbus, OH. pp. 97-100.